PileUp of: @/home/rzusgi/bioc/biochem7/MTclassif/plantout.list Symbol comparison table: GenRunData:pileuppep.cmp CompCheck: 1254 GapWeight: 1.500 GapLengthWeight: 0.100 pileup_970.msf MSF: 105 Type: P August 19, 1997 19:39 Check: 3201 .. Name: ec1_arath Len: 105 Check: 7394 Weight: 1.00 Name: ec3_arath Len: 105 Check: 7496 Weight: 1.00 Name: ec2_arath Len: 105 Check: 7575 Weight: 1.00 Name: ec1_wheat Len: 105 Check: 9680 Weight: 1.00 Name: ec3_wheat Len: 105 Check: 467 Weight: 1.00 Name: ec_maize Len: 105 Check: 7035 Weight: 1.00 Name: mt3_actch Len: 105 Check: 9225 Weight: 1.00 Name: mt3_carpa Len: 105 Check: 30 Weight: 1.00 Name: mt3_musac Len: 105 Check: 8664 Weight: 1.00 Name: mt3_picgl Len: 105 Check: 5337 Weight: 1.00 Name: mt1a_arath Len: 105 Check: 3475 Weight: 1.00 Name: mt1c_arath Len: 105 Check: 3702 Weight: 1.00 Name: mt54_brana Len: 105 Check: 3407 Weight: 1.00 Name: mt1b_arath Len: 105 Check: 8878 Weight: 1.00 Name: mt1_maize Len: 105 Check: 747 Weight: 1.00 Name: mt1_orysa Len: 105 Check: 2342 Weight: 1.00 Name: mt1_horvu Len: 105 Check: 3443 Weight: 1.00 Name: mt1_wheat Len: 105 Check: 2309 Weight: 1.00 Name: mt2a_lyces Len: 105 Check: 5848 Weight: 1.00 Name: mt2x_lyces Len: 105 Check: 5475 Weight: 1.00 Name: mt2y_lyces Len: 105 Check: 7551 Weight: 1.00 Name: mt2_nicpl Len: 105 Check: 7435 Weight: 1.00 Name: mt2z_lyces Len: 105 Check: 105 Weight: 1.00 Name: mt1_mimgu Len: 105 Check: 8082 Weight: 1.00 Name: mt2b_arath Len: 105 Check: 300 Weight: 1.00 Name: mt2_brana Len: 105 Check: 9716 Weight: 1.00 Name: mt2_brara Len: 105 Check: 4124 Weight: 1.00 Name: mt2_brarp Len: 105 Check: 4549 Weight: 1.00 Name: mt2a_arath Len: 105 Check: 5122 Weight: 1.00 Name: mt2b_lyces Len: 105 Check: 330 Weight: 1.00 Name: mt2_nicgu Len: 105 Check: 5336 Weight: 1.00 Name: mta_trirp Len: 105 Check: 3275 Weight: 1.00 Name: mt2_vicfa Len: 105 Check: 4118 Weight: 1.00 Name: mt2_ricco Len: 105 Check: 5249 Weight: 1.00 Name: mt2_cicar Len: 105 Check: 5930 Weight: 1.00 Name: mt2_actch Len: 105 Check: 4758 Weight: 1.00 Name: mt1_cofar Len: 105 Check: 2321 Weight: 1.00 Name: mt21_orysa Len: 105 Check: 3779 Weight: 1.00 Name: mt1_pea Len: 105 Check: 3438 Weight: 1.00 Name: mt1b_vicfa Len: 105 Check: 3748 Weight: 1.00 Name: mt1a_vicfa Len: 105 Check: 5960 Weight: 1.00 Name: mt1_cicar Len: 105 Check: 4198 Weight: 1.00 Name: mtb_trirp Len: 105 Check: 3659 Weight: 1.00 Name: mt1_casgl Len: 105 Check: 9460 Weight: 1.00 Name: mt2_fraan Len: 105 Check: 4929 Weight: 1.00 Name: mt22_orysa Len: 105 Check: 3200 Weight: 1.00 // 1 100 ec1_arath MADTGKGSSV AGCNDSCGCP SPCPGGNSCR CRMR...... .EASAGDQGH MVCPCGEHCG CNPCNCPKTQ TQTSAKG... ..CTCGEGCT .CASCAT... ec3_arath ..DTGKGSSV AGCNDSCGCP SPCPGGNSCR CRMR...... .EASAGDQGH MVCPCGEHCG CNPCNCPKTQ TQTSDKG... ..CTCGEGCT .CASCDT... ec2_arath .ADTGKGSAS ASCNDRCGCP SPCPGGESCR CKMM...... SEASGGDQEH NTCPCGEHCG CNPCNCPKTQ TQTSAKG... ..CTCGEGCT .CATCAA... ec1_wheat .......... .GCDDKCGCA VPCPGGTGCR C.TS...... ARSGAAAGEH TTCGCGEHCG CNPCACGREG T.PSGRANRR ANCSCGAACN .CASCGSATA ec3_wheat .......... .GCNDKCGCA VPCPGGTGCR C.TS...... ARSDAAAGEH TTCGCGEHCG CNPCACGREG T.PSGRANRR ANCSCGAACN .CASCGSTTA ec_maize .......... .GCDDKCGCA VPCPGGKDCR C.TS...... G..SGGQREH TTCGCGEHCE CSPCTCGRAT M.PSGRENRR ANCSCGASCN .CASCASA.. mt3_actch .........M SDKCGNCDCA DSSQCVKKGN SI....D.IV ET..DKSYIE DVVMGVP... .......... .....AAESG GKCKCGTSCP .CVNCTCD.. mt3_carpa .........M SDTCGNCDCA DKTQCVKKGS SYTA..D.II ET..EKS.IM TVVMDAP... .......... .....AAEND GKCKCGPSCS .CTNCTCGH. mt3_musac .........M S.TCGNCDCV DKSQCVKKGN SYGI..D.IV ET..EKSYVD EVIVAAE... .......... .....AAEHD GKCKCGAACA .CTDCKCGN. mt3_picgl .........M SSDCGNCDCA DKSQCTKKG. .FQI..DGIV ETSYEMGHGG DVSL...... .......... .......END ..CKCGPNCQ .CGTCTCHT. mt1a_arath .......... .MADSNCGCG SSCKCGDSCS CEKNY..... .......... .......... .......... ......NKEC DNCSCGSNCS CGSNCNC... mt1c_arath .......... .MAGSNCGCG SSCKCGDSCS CEKNY..... .......... .......... .......... ......NKEC DNCSCGSNCS CGSSCNC... mt54_brana .......... .MAGSNCGCG SGCKCGDSCS CEKNY..... .......... .......... .......... ......NTEC DSCSCGSNCS CGDSCSC... mt1b_arath .....MGLIL TRMILNCGCG SSCKCGDSCS CEKNY..... .......... .......... .......... ......NKEC DNCSCGSNCN F......... mt1_maize .........M S.....CSCG SSCGCGSSCK CGKKYPDLEE TSTAA.Q.PT V.VLGVAPEK KAAPEFVEAA AES...GEAA HGCSCGSGCK .CDPCNC... mt1_orysa .........M S.....CSCG SSCSCGSNCS CGKKYPDLEE KSSST.K.AT V.VLGVAPEK K.AQQF.EAA AES...GETA HGCSCGSSCR .CNPCNC... mt1_horvu .........M S.....CSCG SSCGCGSNCN CGKMYPDLEE KSGATMQ.VT VIVLGVGSAK ...VQF.EEA AEF...GEAA HGCSCGANCK .CNPCNC... mt1_wheat .........M S.....CNCG SGCSCGSDCK CGKMYPDLTE QGSAAAQVAA VVVLGVAPEN K.AGQFEVAA GQS...GE.. .GCSCGDNCK .CNPCNC... mt2a_lyces .........M SCCGGSCGCG SGCKCGSGCG GCGMYPDM.. ....EKSTTF TIIEGVAPIN NYGNVE.... EK..AA..G. EGCKCGSNCT .CDPCNC... mt2x_lyces .........M SCCGGSCGCG SGCKCGNGCG GCGMYPDM.. ....EKSATF SIVEGVAPVH NYGRVE.... EK..AA..G. EGCKCGSNCT .CDPCNC... mt2y_lyces .........M SCCGGSCGCG SGCKCGSGCG GCGMYPDL.. ....ESTTTF TIIEGVAPMK NY.GVA.... EK..ATEGG. NGCKCGSNCT .CDPCNC... mt2_nicpl .........M SCCGGSCGCG SGCKCGSGCG GCGMYPDL.. ....EKSTTF TIIQGVAPMN NFEELG.... EK..AAEGG. NGCKCGSNCT .CDPCNC... mt2z_lyces .........M SGCGGSCNCG SSCSCGKG.G GCNMYPDL.. ....EKSTTL TIIEGVAPMN NKGMVEG.SI EK..ATEGG. NGCKCGSSCK .CDPCNCCSA mt1_mimgu .........M SS...GCSCG SGCKCGDNC. SCSMYPDM.. ....ETNTTV TMIEGVAPLK MYSEGS.... EKSFGAEGG. NGCKCGSNCK .CDPCNC... mt2b_arath .........M SCCGGSCGCG SACKCGNGCG GCKRYPDL.. ....ENTATE TLVLGVAP.. AMNSQYE.AS G.ETFVAEN. DACKCGSDCK .CNPCTCK.. mt2_brana .......... .......... .......... .......... .......... .......... ......E.AS G.ETFVAEN. DACKCGSDCK .CNPCTCK.. mt2_brara .........M SCCGGNCGCG SGCKCGNGCG GCKMYPDLGF SG..ESTTTE TFVFGVAP.. AMKNQYE.AS G.EG.VAEN. DACKCGSDCK .CDPCTCK.. mt2_brarp .........M SCCGGNCGCG SGCKCGNGCG GCKMYPDLGF SG..ESTTTE TFVFGVAP.. AMKNQYE.AS G.EG.VAEN. DRCKCGSDCK .CDPCTCK.. mt2a_arath .........M SCCGGNCGCG SGCKCGNGCG GCKMYPDLGF SG..ETTTTE TFVLGVAP.. AMKNQYE.AS G.ESNNAEN. DACKCGSDCK .CDPCTCK.. mt2b_lyces .........M SCCGGNCGCG SSCKCGNGCG GCKMYPDMSY TE..SSTTTE TLVLGVGP.. E.KTSFG.AM EMGESPVAE. NGCKCGSDCK .CNPCTCSK. mt2_nicgu .........M SCCGGNCGCG SGC...NGCG GCKMYPDLSY NE...STTTE TLVLGVGH.. E.KTSFG.TM EMGESPAAE. NGCKCGSECK .CNPCACSK. mta_trirp .........M SCCGGNCGCG SACKCGNGCG GCKMNADLSY TE...STTTE TIVMGVGS.. A.KAQFE.GA EM...GAES. GGCKCGANCT .CDPCTCK.. mt2_vicfa .........M SCCGGNCGCG SSCKCGSGCG GCKMYADLSY TE...STTSE TLIMGVGS.. E.KAQYE.SA EM...GAEN. DGCKCGANCT .CNPCTCK.. mt2_ricco .........M SCCGGNCGCG SGCKCGNGCG GCKMYPDMSF SE...KTTTE TLVLGVGA.. E.KAHFE.GG EMGVVGAEE. GGCKCGDNCT .CNPCTCK.. mt2_cicar .......... .......... .......... GCKMYPDMSY TE...QTTSE TLVMGVRS.. G.KTQFE.GA EMG.FGAEN. DGCKCGSNCT .CNPCTCK.. mt2_actch .........M SCCGGKCGCG SSCSCGSGCG GCGMYPDLSY SE...MTTTE TLIVGVAP.. Q.KTYFE.GS EMG.VAAEN. .GCKCGSDCK .CDPCTCK.. mt1_cofar .........M SCCGGNCGCG AGCKCSGGCG GCKMYPELSY TE...NTAAE TLILGVAP.. P.KTTYL.EG AGEEAAAEN. GGCKCGPDCK .CNPCNCK.. mt21_orysa .........M SCCGGNCGCG SGCQCGSGCG GCKMYPEMA. .E..EVTTTQ TVIMGVAPSK GHAEGLE.AG AAAGAGAEN. .GCKCGDNCT .CNPCNCGK. mt1_pea .........M S....GCGCG SSCNCGDSCK CNKRSSGLSY SEM...ETTE TVILGVGPA. ..KIQFE.GA EMS.AASED. GGCKCGDNCT .CDPCNCK.. mt1b_vicfa .........M S....GCNCG SSCNCGDSCK CNKRSSGLSY SEV...ETKE TVILGVGPA. ..KIQFE.GA EMS.FASKE. GGCKCGDNCT .CDPCNCK.. mt1a_vicfa .........M S....GCGCG SSCNCGDSCK CNKRSSGLSY SEMETKETKE TVVLGFGPA. ..KIHFD.GA EMS.VASKE. EGCKCGDKCT .CDPCNC... mt1_cicar .........M S....GCNCG SSCNCGDQCK CNKR.SGLSY VEAG..ETTE TVVLGVGPT. ..KIHFE.GA EMS.VAAED. GGCKCGSSCT .CDPCNCK.. mtb_trirp .........M S....GCNCG SSCNCGDSCK CNKRSSGLNY VEA...ETTE TVILGVGPA. ..KIQFE.DA EMG.VAAED. SGCKCGSSCT .CDPCNCK.. mt1_casgl .........M S....SCGCG SGCSCGSGCN CKNPVLGLS. ....EKTTSK TIVADVAPV. ..KSHPE.GS EMS.VEGGH. .GCKCGSSCN .CDPCNC... mt2_fraan .........M SCCGGKCGCG AGCKCGSGCN GCGNYADIT. ...EQSSASE TLVMGVVGTQ ..KLNYG.QA EAGVATEGSC SGCKCV.YCT .CDPCTCK.. mt22_orysa .........M SCCGGNCGCG SGCQCGGGCG GCKMFPDVE. ....ATATTK TFVLAAPSNK ASSGGMEMAV ESGENGGCGC NTCKCGTSCS GCSCCSCN.. 101 ec1_arath ..... ec3_arath ..... ec2_arath ..... ec1_wheat ..... ec3_wheat ..... ec_maize ..... mt3_actch ..... mt3_carpa ..... mt3_musac ..... mt3_picgl ..... mt1a_arath ..... mt1c_arath ..... mt54_brana ..... mt1b_arath ..... mt1_maize ..... mt1_orysa ..... mt1_horvu ..... mt1_wheat ..... mt2a_lyces ..... mt2x_lyces ..... mt2y_lyces ..... mt2_nicpl ..... mt2z_lyces STIWT mt1_mimgu ..... mt2b_arath ..... mt2_brana ..... mt2_brara ..... mt2_brarp ..... mt2a_arath ..... mt2b_lyces ..... mt2_nicgu ..... mta_trirp ..... mt2_vicfa ..... mt2_ricco ..... mt2_cicar ..... mt2_actch ..... mt1_cofar ..... mt21_orysa ..... mt1_pea ..... mt1b_vicfa ..... mt1a_vicfa ..... mt1_cicar ..... mtb_trirp ..... mt1_casgl ..... mt2_fraan ..... mt22_orysa .....