Publications of the Schuler Group

ZORA Publication List

Publications

• 2021

  • Klose, Daniel; Holla, Andrea; Gmeiner, Christoph; Nettels, Daniel; Ritsch, Irina; Bross, Nadja; Yulikov, Maxim; Allain, Frédéric H-T; Schuler, Benjamin; Jeschke, Gunnar (2021). Resolving distance variations by single-molecule FRET and EPR spectroscopy using rotamer libraries. Biophysical Journal, 120(21):4842-4858.
  • Dingfelder, Fabian; Macocco, Iuri; Benke, Stephan; Nettels, Daniel; Faccioli, Pietro; Schuler, Benjamin (2021). Slow Escape from a Helical Misfolded State of the Pore-Forming Toxin Cytolysin A. JACS Au, 1(8):1217-1230.
  • Benke, Stephan; Holla, Andrea; Wunderlich, Bengt; Soranno, Andrea; Nettels, Daniel; Schuler, Benjamin (2021). Combining Rapid Microfluidic Mixing and Three-Color Single-Molecule FRET for Probing the Kinetics of Protein Conformational Changes. Journal of Physical Chemistry B, 125(24):6617-6628.
  • Stüber, Jakob C; Richter, Christian P; Bellón, Junel Sotolongo; Schwill, Martin; König, Iwo; Schuler, Benjamin; Piehler, Jacob; Plückthun, Andreas (2021). Apoptosis-inducing anti-HER2 agents operate through oligomerization-induced receptor immobilization. Communications Biology, 4:762.
  • König, Iwo; Soranno, Andrea; Nettels, Daniel; Schuler, Benjamin (2021). Impact of In-Cell and In-Vitro Crowding on the Conformations and Dynamics of an Intrinsically Disordered Protein. Angewandte Chemie Internationale Edition, 60(19):10724-10729.
  • Lerner, Eitan; Barth, Anders; Hendrix, Jelle; et al; Nettels, Daniel; Schuler, Benjamin (2021). FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices. eLife, 10:e60416.

• 2020

  • Sottini, Andrea; Borgia, Alessandro; Borgia, Madeleine B; Bugge, Katrine; Nettels, Daniel; Chowdhury, Aritra; Heidarsson, Pétur O; Zosel, Franziska; Best, Robert B; Kragelund, Birthe B; Schuler, Benjamin (2020). Polyelectrolyte interactions enable rapid association and dissociation in high-affinity disordered protein complexes. Nature Communications, 11(1):5736.
  • Zijlstra, Niels; Nettels, Daniel; Satija, Rohit; Makarov, Dmitrii E; Schuler, Benjamin (2020). Transition Path Dynamics of a Dielectric Particle in a Bistable Optical Trap. Physical Review Letters, 125(14):146001.
  • Zosel, Franziska; Soranno, Andrea; Buholzer, Karin J; Nettels, Daniel; Schuler, Benjamin (2020). Depletion interactions modulate the binding between disordered proteins in crowded environments. Proceedings of the National Academy of Sciences of the United States of America, 117(24):13480-13489.
  • Ernst, Patrick; Zosel, Franziska; Reichen, Christian; Nettels, Daniel; Schuler, Benjamin; Plückthun, Andreas (2020). Structure-Guided Design of a Peptide Lock for Modular Peptide Binders. ACS Chemical Biology, 15(2):457-468.
  • Gosavi, Shachi; Schuler, Benjamin (2020). Editorial overview: Molecular interactions that drive folding and binding: new challenges and opportunities. Current Opinion in Structural Biology, 60:iii-iv.
  • Schuler, Benjamin; Borgia, Alessandro; Borgia, Madeleine B; Heidarsson, Pétur O; Holmstrom, Erik D; Nettels, Daniel; Sottini, Andrea (2020). Binding without folding - the biomolecular function of disordered polyelectrolyte complexes. Current Opinion in Structural Biology, 60:66-76.

• 2019

  • Assenza, Salvatore; Sassi, Alberto Stefano; Kellner, Ruth; Schuler, Benjamin; De Los Rios, Paolo; Barducci, Alessandro (2019). Efficient conversion of chemical energy into mechanical work by Hsp70 chaperones. eLife, 8:e48491.
  • Holmstrom, Erik D; Liu, Zhaowei; Nettels, Daniel; Best, Robert B; Schuler, Benjamin (2019). Disordered RNA chaperones can enhance nucleic acid folding via local charge screening. Nature Communications, 10:2453.

• 2018

  • Schuler, Benjamin; Szabo, Attila; Wolynes, Peter G (2018). Tribute to William A. Eaton. Journal of Physical Chemistry B, 122(49):10971-10973.
  • Rezaei-Ghaleh, Nasrollah; Parigi, Giacomo; Soranno, Andrea; Holla, Andrea; Becker, Stefan; Schuler, Benjamin; Luchinat, Claudio; Zweckstetter, Markus (2018). Local and Global Dynamics in Intrinsically Disordered Synuclein. Angewandte Chemie Internationale Edition, 57(46):15262-15266.
  • Sturzenegger, Flurin; Zosel, Franziska; Holmstrom, Erik D; Buholzer, Karin J; Makarov, Dmitrii E; Nettels, Daniel; Schuler, Benjamin (2018). Transition path times of coupled folding and binding reveal the formation of an encounter complex. Nature Communications, 9:4708.
  • Hellenkamp, Björn; Schmid, Sonja; et al; Nettels, Daniel; Schuler, Benjamin (2018). Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods, 15(11):984.
  • Grotz, Kara K; Nueesch, Mark F; Holmstrom, Erik D; Heinz, Marcel; Stelzl, Lukas S; Schuler, Benjamin; Hummer, Gerhard (2018). Dispersion Correction Alleviates Dye Stacking of Single-Stranded DNA and RNA in Simulations of Single-Molecule Fluorescence Experiments. Journal of Physical Chemistry B, 122:11626-11639.
  • Zheng, Wenwei; Hofmann, Hagen; Schuler, Benjamin; Best, Robert B (2018). Origin of Internal Friction in Disordered Proteins Depends on Solvent Quality. Journal of Physical Chemistry B, 122:11478-11487.
  • Marino, Jacopo; Buholzer, Karin J; Zosel, Franziska; Nettels, Daniel; Schuler, Benjamin (2018). Charge Interactions Can Dominate Coupled Folding and Binding on the Ribosome. Biophysical Journal, 115(6):996-1006.
  • Dingfelder, Fabian; Benke, Stephan; Nettels, Daniel; Schuler, Benjamin (2018). Mapping an Equilibrium Folding Intermediate of the Cytolytic Pore Toxin ClyA with Single-Molecule FRET. Journal of Physical Chemistry B, 122:11251-11261.
  • Hellenkamp, Björn; Schmid, Sonja; et al; Nettels, Daniel; Schuler, Benjamin (2018). Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods, 15(9):669-676.
  • Best, Robert B; Zheng, Wenwei; Borgia, Alessandro; Buholzer, Karin; Borgia, Madeleine B; Hofmann, Hagen; Soranno, Andrea; Nettels, Daniel; Gast, Klaus; Grishaev, Alexander; Schuler, Benjamin (2018). Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water". Science, 361(6405):eaar7101.
  • Zosel, Franziska; Mercadante, Davide; Nettels, Daniel; Schuler, Benjamin (2018). A proline switch explains kinetic heterogeneity in a coupled folding and binding reaction. Nature Communications, 9:3332.
  • Schuler, Benjamin (2018). Perspective: Chain dynamics of unfolded and intrinsically disordered proteins from nanosecond fluorescence correlation spectroscopy combined with single-molecule FRET. Journal of Chemical Physics, 149(1):010901.
  • Makarov, Dmitrii E; Schuler, Benjamin (2018). Preface: Special Topic on Single-Molecule Biophysics. Journal of Chemical Physics, 148(12):123001.
  • Masliah, Gregoire; Maris, Christophe; König, Sebastian L B; Yulikov, Maxim; Aeschimann, Florian; Malinowska, Anna L; Mabille, Julie; Weiler, Jan; Holla, Andrea; Hunziker, Juerg; Meisner-Kober, Nicole; Schuler, Benjamin; Jeschke, Gunnar; Allain, Frederic H-T (2018). Structural basis of siRNA recognition by TRBP double-stranded RNA binding domains. The EMBO Journal, 37(6):e97089.
  • Morger, Damien; Zosel, Franziska; Bühlmann, Martin; Züger, Sara; Mittelviefhaus, Maximilian; Schuler, Benjamin; Luban, Jeremy; Grütter, Markus G (2018). The Three-Fold Axis of the HIV-1 Capsid Lattice Is the Species-Specific Binding Interface for TRIM5α. Journal of Virology, 92(5):e01541-17.
  • Borgia, Alessandro; Borgia, Madeleine B; Bugge, Katrine; Kissling, Vera M; Heidarsson, Pétur O; Fernandes, Catarina B; Sottini, Andrea; Soranno, Andrea; Buholzer, Karin J; Nettels, Daniel; Kragelund, Birthe B; Best, Robert B; Schuler, Benjamin (2018). Extreme disorder in an ultrahigh-affinity protein complex. Nature, 555(7694):61-66.
  • Hansen, Simon; Ernst, Patrick; König, Sebastian L B; Reichen, Christian; Ewald, Christina; Nettels, Daniel; Mittl, Peer R E; Schuler, Benjamin; Plückthun, Andreas (2018). Curvature of designed armadillo repeat proteins allows modular peptide binding. Journal of Structural Biology, 201(2):108-117.
  • Holmstrom, Erik D; Holla, Andrea; Zheng, Wenwei; Nettels, Daniel; Best, Robert B; Schuler, Benjamin (2018). Accurate Transfer Efficiencies, Distance Distributions, and Ensembles of Unfolded and Intrinsically Disordered Proteins From Single-Molecule FRET. Methods in Enzymology, 611:287-325.
  • Zheng, Wenwei; Zerze, Gül H; Borgia, Alessandro; Mittal, Jeetain; Schuler, Benjamin; Best, Robert B (2018). Inferring properties of disordered chains from FRET transfer efficiencies. Journal of Chemical Physics, 148(12):123329.
  • Holmstrom, Erik D; Nettels, Daniel; Schuler, Benjamin (2018). Conformational plasticity of hepatitis C virus core protein enables RNA-induced formation of nucleocapsid-like particles. Journal of Molecular Biology, 430(16):2453-2467.
  • Reinartz, Ines; Sinner, Claude; Nettels, Daniel; Stucki-Buchli, Brigitte; Stockmar, Florian; Panek, Pawel T; Jacob, Christoph R; Nienhaus, Gerd Ulrich; Schuler, Benjamin; Schug, Alexander (2018). Simulation of FRET dyes allows quantitative comparison against experimental data. Journal of Chemical Physics, 148(12):123321.

Pagination