Publications of the Schuler Group

ZORA Publication List

Publications

• 2018

  • Schuler, Benjamin; Szabo, Attila; Wolynes, Peter G (2018). Tribute to William A. Eaton. Journal of Physical Chemistry B, 122(49):10971-10973.
  • Rezaei-Ghaleh, Nasrollah; Parigi, Giacomo; Soranno, Andrea; Holla, Andrea; Becker, Stefan; Schuler, Benjamin; Luchinat, Claudio; Zweckstetter, Markus (2018). Local and Global Dynamics in Intrinsically Disordered Synuclein. Angewandte Chemie Internationale Edition, 57(46):15262-15266.
  • Sturzenegger, Flurin; Zosel, Franziska; Holmstrom, Erik D; Buholzer, Karin J; Makarov, Dmitrii E; Nettels, Daniel; Schuler, Benjamin (2018). Transition path times of coupled folding and binding reveal the formation of an encounter complex. Nature Communications, 9:4708.
  • Hellenkamp, Björn; Schmid, Sonja; et al; Nettels, Daniel; Schuler, Benjamin (2018). Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods, 15(11):984.
  • Grotz, Kara K; Nueesch, Mark F; Holmstrom, Erik D; Heinz, Marcel; Stelzl, Lukas S; Schuler, Benjamin; Hummer, Gerhard (2018). Dispersion Correction Alleviates Dye Stacking of Single-Stranded DNA and RNA in Simulations of Single-Molecule Fluorescence Experiments. Journal of Physical Chemistry B, 122:11626-11639.
  • Zheng, Wenwei; Hofmann, Hagen; Schuler, Benjamin; Best, Robert B (2018). Origin of Internal Friction in Disordered Proteins Depends on Solvent Quality. Journal of Physical Chemistry B, 122:11478-11487.
  • Marino, Jacopo; Buholzer, Karin J; Zosel, Franziska; Nettels, Daniel; Schuler, Benjamin (2018). Charge Interactions Can Dominate Coupled Folding and Binding on the Ribosome. Biophysical Journal, 115(6):996-1006.
  • Dingfelder, Fabian; Benke, Stephan; Nettels, Daniel; Schuler, Benjamin (2018). Mapping an Equilibrium Folding Intermediate of the Cytolytic Pore Toxin ClyA with Single-Molecule FRET. Journal of Physical Chemistry B, 122:11251-11261.
  • Hellenkamp, Björn; Schmid, Sonja; et al; Nettels, Daniel; Schuler, Benjamin (2018). Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods, 15(9):669-676.
  • Best, Robert B; Zheng, Wenwei; Borgia, Alessandro; Buholzer, Karin; Borgia, Madeleine B; Hofmann, Hagen; Soranno, Andrea; Nettels, Daniel; Gast, Klaus; Grishaev, Alexander; Schuler, Benjamin (2018). Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water". Science, 361(6405):eaar7101.
  • Zosel, Franziska; Mercadante, Davide; Nettels, Daniel; Schuler, Benjamin (2018). A proline switch explains kinetic heterogeneity in a coupled folding and binding reaction. Nature Communications, 9:3332.
  • Schuler, Benjamin (2018). Perspective: Chain dynamics of unfolded and intrinsically disordered proteins from nanosecond fluorescence correlation spectroscopy combined with single-molecule FRET. Journal of Chemical Physics, 149(1):010901.
  • Makarov, Dmitrii E; Schuler, Benjamin (2018). Preface: Special Topic on Single-Molecule Biophysics. Journal of Chemical Physics, 148(12):123001.
  • Masliah, Gregoire; Maris, Christophe; König, Sebastian L B; Yulikov, Maxim; Aeschimann, Florian; Malinowska, Anna L; Mabille, Julie; Weiler, Jan; Holla, Andrea; Hunziker, Juerg; Meisner-Kober, Nicole; Schuler, Benjamin; Jeschke, Gunnar; Allain, Frederic H-T (2018). Structural basis of siRNA recognition by TRBP double-stranded RNA binding domains. The EMBO Journal, 37(6):e97089.
  • Morger, Damien; Zosel, Franziska; Bühlmann, Martin; Züger, Sara; Mittelviefhaus, Maximilian; Schuler, Benjamin; Luban, Jeremy; Grütter, Markus G (2018). The Three-Fold Axis of the HIV-1 Capsid Lattice Is the Species-Specific Binding Interface for TRIM5α. Journal of Virology, 92(5):e01541-17.
  • Borgia, Alessandro; Borgia, Madeleine B; Bugge, Katrine; Kissling, Vera M; Heidarsson, Pétur O; Fernandes, Catarina B; Sottini, Andrea; Soranno, Andrea; Buholzer, Karin J; Nettels, Daniel; Kragelund, Birthe B; Best, Robert B; Schuler, Benjamin (2018). Extreme disorder in an ultrahigh-affinity protein complex. Nature, 555(7694):61-66.
  • Hansen, Simon; Ernst, Patrick; König, Sebastian L B; Reichen, Christian; Ewald, Christina; Nettels, Daniel; Mittl, Peer R E; Schuler, Benjamin; Plückthun, Andreas (2018). Curvature of designed armadillo repeat proteins allows modular peptide binding. Journal of Structural Biology, 201(2):108-117.
  • Holmstrom, Erik D; Holla, Andrea; Zheng, Wenwei; Nettels, Daniel; Best, Robert B; Schuler, Benjamin (2018). Accurate Transfer Efficiencies, Distance Distributions, and Ensembles of Unfolded and Intrinsically Disordered Proteins From Single-Molecule FRET. Methods in Enzymology, 611:287-325.
  • Zheng, Wenwei; Zerze, Gül H; Borgia, Alessandro; Mittal, Jeetain; Schuler, Benjamin; Best, Robert B (2018). Inferring properties of disordered chains from FRET transfer efficiencies. Journal of Chemical Physics, 148(12):123329.
  • Holmstrom, Erik D; Nettels, Daniel; Schuler, Benjamin (2018). Conformational plasticity of hepatitis C virus core protein enables RNA-induced formation of nucleocapsid-like particles. Journal of Molecular Biology, 430(16):2453-2467.
  • Reinartz, Ines; Sinner, Claude; Nettels, Daniel; Stucki-Buchli, Brigitte; Stockmar, Florian; Panek, Pawel T; Jacob, Christoph R; Nienhaus, Gerd Ulrich; Schuler, Benjamin; Schug, Alexander (2018). Simulation of FRET dyes allows quantitative comparison against experimental data. Journal of Chemical Physics, 148(12):123321.

• 2017

  • Zosel, Franziska; Haenni, Dominik; Soranno, Andrea; Nettels, Daniel; Schuler, Benjamin (2017). Combining short- and long-range fluorescence reporters with simulations to explore the intramolecular dynamics of an intrinsically disordered protein. Journal of Chemical Physics, 147(15):152708.
  • Plitzko, Jürgen M; Schuler, Benjamin; Selenko, Philipp (2017). Structural biology outside the box-inside the cell. Current Opinion in Structural Biology, 46:110-121.
  • Zijlstra, Niels; Dingfelder, Fabian; Wunderlich, Bengt; Zosel, Franziska; Benke, Stephan; Nettels, Daniel; Schuler, Benjamin (2017). Rapid microfluidic dilution for single-molecule spectroscopy of low-affinity biomolecular complexes. Angewandte Chemie Internationale Edition, 56(25):7126-7129.
  • Dingfelder, Fabian; Wunderlich, Bengt; Benke, Stephan; Zosel, Franziska; Zijlstra, Niels; Nettels, Daniel; Schuler, Benjamin (2017). Rapid microfluidic double-jump mixing device for single-molecule spectroscopy. Journal of the American Chemical Society, 139(17):6062-6065.
  • Ruggeri, Francesca; Zosel, Franziska; Mutter, Natalie; Różycka, Mirosława; Wojtas, Magdalena; Ożyhar, Andrzej; Schuler, Benjamin; Krishnan, Madhavi (2017). Single-molecule electrometry. Nature Nanotechnology, 12(5):488-495.
  • Benke, Stephan; Nettels, Daniel; Hofmann, Hagen; Schuler, Benjamin (2017). Quantifying kinetics from time series of single-molecule Förster resonance energy transfer efficiency histograms. Nanotechnology, 28(11):114002.
  • Soranno, Andrea; Holla, Andrea; Dingfelder, Fabian; Nettels, Daniel; Makarov, Dmitrii E; Schuler, Benjamin (2017). Integrated view of internal friction in unfolded proteins from single-molecule FRET, contact quenching, theory, and simulations. Proceedings of the National Academy of Sciences of the United States of America, 114(10):E1833-E1839.

• 2016

  • Borgia, Alessandro; Zheng, Wenwei; Buholzer, Karin; Borgia, Madeleine B; Schüler, Anja; Hofmann, Hagen; Soranno, Andrea; Nettels, Daniel; Gast, Klaus; Grishaev, Alexander; Best, Robert B; Schuler, Benjamin (2016). Consistent view of polypeptide chain expansion in chemical denaturants from multiple experimental methods. Journal of the American Chemical Society, 138(36):11714-11726.
  • Zheng, Wenwei; Borgia, Alessandro; Buholzer, Karin; Grishaev, Alexander; Schuler, Benjamin; Best, Robert B (2016). Probing the Action of Chemical Denaturant on an Intrinsically Disordered Protein by Simulation and Experiment. Journal of the American Chemical Society, 138(36):11702-11713.
  • Aznauryan, Mikayel; Delgado, Leonildo; Soranno, Andrea; Nettels, Daniel; Huang, Jie-Rong; Labhardt, Alexander M; Grzesiek, Stephan; Schuler, Benjamin (2016). Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS. Proceedings of the National Academy of Sciences of the United States of America, 113(37):E5389-E5398.
  • Schuler, Benjamin; Soranno, Andrea; Hofmann, Hagen; Nettels, Daniel (2016). Single-molecule FRET spectroscopy and the polymer physics of unfolded and intrinsically disordered proteins. Annual Review of Biophysics, 45:207-231.
  • Roderer, Daniel; Benke, Stephan; Schuler, Benjamin; Glockshuber, Rudi (2016). Soluble oligomers of the pore-forming toxin cytolysin a from escherichia coli are off-pathway products of pore assembly. Journal of Biological Chemistry, 291(11):5652-5663.
  • Benke, Stephan; Roderer, Daniel; Wunderlich, Bengt; Nettels, Daniel; Glockshuber, Rudi; Schuler, Benjamin (2016). Erratum: The assembly dynamics of the cytolytic pore toxin ClyA. Nature Communications, 7:10650.

Pagination