Publications 2025

ZORA Publication List

Publications

• Sequeira, Daniela Policarpo; Suomalainen, Maarit; Freitag, Patrick C; Plückthun, Andreas; Klingenbrunner, Michael; Fischer, Lucy; Hemmi, Silvio; Münz, Christian; Volle, Romain; Greber, Urs F (2025). Activated blood-derived human primary T cells support replication of HAdV C5 and virus transmission to polarized human primary epithelial cells. Journal of Virology:Epub ahead of print.
• Bugge, Katrine; Sottini, Andrea; Ivanović, Miloš T; Buus, Freia S; Saar, Daniel; Fernandes, Catarina B; Kocher, Fabienne; Martinsen, Jacob H; Schuler, Benjamin; Best, Robert B; Kragelund, Birthe B (2025). Role of charges in a dynamic disordered complex between an IDP and a folded domain. Nature Communications, 16(1):3242.
• Nüesch, Mark F; Ivanović, Miloš T; Nettels, Daniel; Best, Robert B; Schuler, Benjamin (2025). Accuracy of distance distributions and dynamics from single-molecule FRET. Biophysical Journal:Epub ahead of print.
• Vitalis, Andreas; Parker, David; Radler, Fabian; Vargas-Rosales, Pablo Andrés; Zhang, Yang; Marchand, Jean-Rémy; Caflisch, Amedeo (2025). Parallelized Tools for the Preparation and Curation of Large Libraries for Virtual Screening. Journal of Computational Chemistry, 46(7):e70074.
• Loeff, Luuk; Kroupova, Alena; Asanović, Igor; Boneberg, Franziska M; Pfleiderer, Moritz M; Riermeier, Luca; Leitner, Alexander; Ferdigg, Andrè; Ackle, Fabian; Martinez, Javier; Jinek, Martin (2025). Mechanistic basis for PYROXD1-mediated protection of the human tRNA ligase complex against oxidative inactivation. Nature Structural & Molecular Biology:Epub ahead of print.
• Vitalis, Andreas; Winkler, Steffen; Zhang, Yang; Widmer, Julian; Caflisch, Amedeo (2025). A FAIR-Compliant Management Solution for Molecular Simulation Trajectories. Journal of Chemical Information and Modeling, 65(5):2443-2455.
• Tröster, Vera; Wong, Ronald P; Börgel, Arne; Cakilkaya, Baris; Renz, Christian; Möckel, Martin M; Eifler-Olivi, Karolin; Marinho, Joana; Reinberg, Thomas; Furler, Sven; Schaefer, Jonas V; Plückthun, Andreas; Wolf, Eva; Ulrich, Helle D (2025). Custom affinity probes reveal DNA-damage-induced, ssDNA-independent chromatin SUMOylation in budding yeast. Cell Reports, 44(3):115353.
• Finocchio, Giada; Querques, Irma; Chanez, Christelle; Speichert, Katarzyna J; Jinek, Martin (2025). Structural basis of TnsC oligomerization and transposase recruitment in type I-B CRISPR-associated transposons. Nucleic Acids Research, 53(5):gkaf149.
• Muhar, Matthias F; Farnung, Jakob; Cernakova, Martina; Hofmann, Raphael; Henneberg, Lukas T; Pfleiderer, Moritz M; Denoth-Lippuner, Annina; Kalčic, Filip; Nievergelt, Ajse S; Peters Al-Bayati, Marwa; Sidiropoulos, Nikolaos D; Beier, Viola; Mann, Matthias; Jessberger, Sebastian; Jinek, Martin; Schulman, Brenda A; Bode, Jeffrey W; Corn, Jacob E (2025). C-terminal amides mark proteins for degradation via SCF-FBXO31. Nature, 638(8050):519-527.
• Loeff, Luuk; Walter, Alexander; Rosalen, Gian Tizio; Jinek, Martin (2025). DNA end sensing and cleavage by the Shedu anti-phage defense system. Cell, 188(3):721-733.e17.
• Vargas-Rosales, Pablo Andrés; Caflisch, Amedeo (2025). The physics-AI dialogue in drug design. RSC Medicinal Chemistry, 16(4):1499-1515.
• Liziczai, Márton; Fuchs, Ariane; Manatschal, Cristina; Dutzler, Raimund (2025). Structural basis for metal ion transport by the human SLC11 proteins DMT1 and NRAMP1. Nature Communications, 16(1):761.
• Jungfer, Kenny; Moravčík, Štefan; Garcia-Doval, Carmela; Knörlein, Anna; Hall, Jonathan; Jinek, Martin (2025). Mechanistic determinants and dynamics of cA6 synthesis in type III CRISPR-Cas effector complexes. Nucleic Acids Research, 53(2):gkae1277.
• Münick, Philipp; Strubel, Alexander; Balourdas, Dimitrios-Ilias; Funk, Julianne S; Mernberger, Marco; Osterburg, Christian; Dreier, Birgit; Schaefer, Jonas V; Tuppi, Marcel; Yüksel, Büşra; Schäfer, Birgit; Knapp, Stefan; Plückthun, Andreas; Stiewe, Thorsten; Joerger, Andreas C; Dötsch, Volker (2025). DARPin-induced reactivation of p53 in HPV-positive cells. Nature Structural & Molecular Biology:Epub ahead of print.
• Wang, Baihui; Luo, Qiang; Medalia, Ohad (2025). Lamins and chromatin join forces. Advances in Biological Regulation, 95:101059.