Publications of the Jinek Group
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Publications
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2025
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Mechanistic basis for PYROXD1-mediated protection of the human tRNA ligase complex against oxidative inactivation. Nature Structural & Molecular Biology:Epub ahead of print.
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Structural basis of TnsC oligomerization and transposase recruitment in type I-B CRISPR-associated transposons. Nucleic Acids Research, 53(5):gkaf149.
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C-terminal amides mark proteins for degradation via SCF-FBXO31. Nature, 638(8050):519-527.
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DNA end sensing and cleavage by the Shedu anti-phage defense system. Cell, 188(3):721-733.e17.
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Mechanistic determinants and dynamics of cA6 synthesis in type III CRISPR-Cas effector complexes. Nucleic Acids Research, 53(2):gkae1277.
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2024
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Gene editing of NCF1 loci is associated with homologous recombination and chromosomal rearrangements. Communications Biology, 7(1):1291.
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Targeted knock-in of NCF1 cDNA into the NCF2 locus leads to myeloid phenotypic correction of p47 $^{phox}$ -deficient chronic granulomatous disease. Molecular Therapy : Nucleic Acids, 35(3):102229.
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Engineering a Novel Probiotic Toolkit in Escherichia coli Nissle 1917 for Sensing and Mitigating Gut Inflammatory Diseases. ACS Synthetic Biology, 13(8):2376-2390.
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Molecular mechanism of plasmid elimination by the DdmDE defense system. Science, 385(6705):188-194.
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HLTF disrupts Cas9-DNA post-cleavage complexes to allow DNA break processing. Nature Communications, 15(1):5789.
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RNA-guided RNA silencing by an Asgard archaeal Argonaute. Nature Communications, 15(1):5499.
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Enhancing prime editor activity by directed protein evolution in yeast. Nature Communications, 15(1):2092.
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Continuous directed evolution of a compact CjCas9 variant with broad PAM compatibility. Nature Chemical Biology, 20(3):333-343.
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Past, present, and future of CRISPR genome editing technologies. Cell, 187(5):1076-1100.
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Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA. Nucleic Acids Research, 52(4):2012-2029.
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An alpha-helical lid guides the target DNA toward catalysis in CRISPR-Cas12a. Nature Communications, 15(1):1473.
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Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Research, 52(1):462-473.
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2023
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Publisher Correction: R-loop formation and conformational activation mechanisms of Cas9. Nature, 623(7987):E10.
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PAM-flexible genome editing with an engineered chimeric Cas9. Nature Communications, 14(1):6175.
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2022
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Structural basis for the assembly of the type V CRISPR-associated transposon complex. Cell, 185(26):4999-5010.e17.
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Structural basis for Cas9 off-target activity. Cell, 185(22):4067-4081.e21.
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Principles of target DNA cleavage and the role of Mg2+ in the catalysis of CRISPR-Cas9. Nature Catalysis, 5(10):912-922.
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R-loop formation and conformational activation mechanisms of Cas9. Nature, 609(7925):191-196.
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