Publications of the Jinek Group

ZORA Publication List

Publications

• 2019

  • Allain, F. H.-T., & Jinek, M. (2019). Editorial overview: Protein-nucleic acid interactions - cryo-EM, what else? Current Opinion in Structural Biology, 59, vi–viii. https://doi.org/10.1016/j.sbi.2019.09.005
  • Kumar, A., Clerici, M., Muckenfuss, L. M., Passmore, L. A., & Jinek, M. (2019). Mechanistic insights into mRNA 3’-end processing. Current Opinion in Structural Biology, 59, 143–150. https://doi.org/10.1016/j.sbi.2019.08.001
  • Dumeau, C.-E., Monfort, A., Kissling, L., Swarts, D. C., Jinek, M., & Wutz, A. (2019). Introducing gene deletions by mouse zygote electroporation of Cas12a/Cpf1 Transgenic Research, 28, 525–535. https://doi.org/10.1007/s11248-019-00168-9
  • Boneberg, F. M., Brandmann, T., Kobel, L., van den Heuvel, J., Bargsten, K., Bammert, L., Kutay, U., & Jinek, M. (2019). Corrigendum: Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14A in ribosome biogenesis RNA, 25, 1576. https://doi.org/10.1261/rna.072900.119
  • Hegge, J. W., Swarts, D. C., Chandradoss, S. D., Cui, T. J., Kneppers, J., Jinek, M., Joo, C., & van der Oost, J. (2019). DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute Nucleic Acids Research, 47, 5809–5821. https://doi.org/10.1093/nar/gkz306
  • Boneberg, F. M., Brandmann, T., Kobel, L., van den Heuvel, J., Bargsten, K., Bammert, L., Kutay, U., & Jinek, M. (2019). Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14A in ribosome biogenesis RNA, 25, 685–701. https://doi.org/10.1261/rna.069609.118
  • Ricci, C. G., Chen, J. S., Miao, Y., Jinek, M., Doudna, J. A., McCammon, J. A., & Palermo, G. (2019). Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics ACS Central Science, 5, 651–662. https://doi.org/10.1021/acscentsci.9b00020
  • Swarts, D. C., & Jinek, M. (2019). Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a Molecular Cell, 73, 589-600.e4. https://doi.org/10.1016/j.molcel.2018.11.021
  • Kroupova, A., Ivaşcu, A., Reimão-Pinto, M. M., Ameres, S. L., & Jinek, M. (2019). Structural basis for acceptor RNA substrate selectivity of the 3’ terminal uridylyl transferase Tailor. Nucleic Acids Research, 47, 1030–1042. https://doi.org/10.1093/nar/gky1164
  • Savić, N., Ringnalda, F. C., Berk, C., Bargsten, K., Hall, J., Jinek, M., & Schwank, G. (2019). In vitro Generation of CRISPR-Cas9 Complexes with Covalently Bound Repair Templates for Genome Editing in Mammalian Cells. Bio-Protocol, 9, 1–48. https://doi.org/10.21769/BioProtoc.3136

• 2018

  • Nishimura, T., Fakim, H., Brandmann, T., Youn, J.-Y., Gingras, A.-C., Jinek, M., & Fabian, M. R. (2018). Human MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs Nucleic Acids Research, 46, 12008–12021. https://doi.org/10.1093/nar/gky1011
  • Savic, N., Ringnalda, F. C. A. S., Lindsay, H., Berk, C., Bargsten, K., Li, Y., Neri, D., Robinson, M. D., Ciaudo, C., Hall, J., Jinek, M., & Schwank, G. (2018). Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair ELife, 7, 33761. https://doi.org/10.7554/eLife.33761
  • Swarts, D. C., & Jinek, M. (2018). Cas9 versus Cas12a/Cpf1: Structure-function comparisons and implications for genome editing Wiley Interdisciplinary Reviews. RNA, 9, e1481. https://doi.org/10.1002/wrna.1481
  • Brandmann, T., Fakim, H., Padamsi, Z., Youn, J.-Y., Gingras, A.-C., Fabian, M. R., & Jinek, M. (2018). Molecular architecture of LSM14 interactions involved in the assembly of mRNA silencing complexes The EMBO Journal, 37, e97869. https://doi.org/10.15252/embj.201797869
  • Clerici, M., Faini, M., Muckenfuss, L. M., Aebersold, R., & Jinek, M. (2018). Author Correction: Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex Nature Structural & Molecular Biology, 25, 355. https://doi.org/10.1038/s41594-018-0044-6
  • Clerici, M., Faini, M., Muckenfuss, L. M., Aebersold, R., & Jinek, M. (2018). Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex Nature Structural & Molecular Biology, 25, 135–138. https://doi.org/10.1038/s41594-017-0020-6
  • Vlot, M., Houkes, J., Lochs, S. J. A., Swarts, D. C., Zheng, P., Kunne, T., Mohanraju, P., Anders, C., Jinek, M., van der Oost, J., Dickman, M. J., & Brouns, S. J. J. (2018). Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR-Cas effector complexes Nucleic Acids Research, 46, 873–885. https://doi.org/10.1093/nar/gkx1264
  • Palermo, G., Chen, J. S., Ricci, C. G., Rivalta, I., Jinek, M., Batista, V. S., Doudna, J. A., & McCammon, J. A. (2018). Key role of the REC lobe during CRISPR-Cas9 activation by “sensing”, “regulating”, and “locking” the catalytic HNH domain. Quarterly Reviews of Biophysics, 51, e91. https://doi.org/10.1017/S0033583518000070

• 2017

  • Clerici, M., Faini, M., Aebersold, R., & Jinek, M. (2017). Structural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex ELife, 6, e33111. https://doi.org/10.7554/eLife.33111
  • Palermo, G., Ricci, C. G., Fernando, A., Basak, R., Jinek, M., Rivalta, I., Batista, V. S., & McCammon, J. A. (2017). Protospacer Adjacent Motif-Induced Allostery Activates CRISPR-Cas9 Journal of the American Chemical Society, 139, 16028–16031. https://doi.org/10.1021/jacs.7b05313

Pagination